Index

_

__init__() (modelarrayio.utils.mif_image.MifHeader method) (modelarrayio.utils.mif_image.MifImage method)

A

add_log_level_arg() (in module modelarrayio.cli.parser_utils)

B

brain_names_to_dataframe() (in module modelarrayio.utils.cifti)

build_scalar_sources() (in module modelarrayio.utils.misc)

C

cifti_to_h5() (in module modelarrayio.cli.cifti_to_h5) cohort_to_long_dataframe() (in module modelarrayio.utils.misc) compute_chunk_shape_full_subjects() (in module modelarrayio.storage.h5_storage) compute_full_subject_chunk_shape() (in module modelarrayio.storage.utils) compute_tile_shape_full_subjects() (in module modelarrayio.storage.tiledb_storage)

configure_logging() (in module modelarrayio.cli.utils) create_empty_scalar_matrix_array() (in module modelarrayio.storage.tiledb_storage) create_empty_scalar_matrix_dataset() (in module modelarrayio.storage.h5_storage) create_scalar_matrix_array() (in module modelarrayio.storage.tiledb_storage) create_scalar_matrix_dataset() (in module modelarrayio.storage.h5_storage)

D

detect_modality_from_path() (in module modelarrayio.utils.misc)

E

export_results() (in module modelarrayio.cli.export_results)

export_results_main() (in module modelarrayio.cli.export_results) extract_cifti_scalar_data() (in module modelarrayio.utils.cifti)

F

flattened_image() (in module modelarrayio.utils.nifti)

G

gather_fixels() (in module modelarrayio.utils.mif)

H

h5_to_cifti() (in module modelarrayio.cli.h5_to_cifti)

h5_to_mif() (in module modelarrayio.cli.h5_to_mif) h5_to_nifti() (in module modelarrayio.cli.h5_to_nifti)

I

is_s3_path() (in module modelarrayio.utils.s3_utils)

L

load_and_normalize_cohort() (in module modelarrayio.utils.misc) load_cohort_cifti() (in module modelarrayio.utils.cifti)

load_cohort_mif() (in module modelarrayio.utils.mif) load_cohort_voxels() (in module modelarrayio.utils.nifti) load_nibabel() (in module modelarrayio.utils.s3_utils)

M

main() (in module modelarrayio.cli.main) mif_to_h5() (in module modelarrayio.cli.mif_to_h5) mif_to_image() (in module modelarrayio.utils.mif) MifHeader (class in modelarrayio.utils.mif_image) MifImage (class in modelarrayio.utils.mif_image) modelarrayio module modelarrayio.cli module modelarrayio.cli.cifti_to_h5 module modelarrayio.cli.export_results module modelarrayio.cli.h5_to_cifti module modelarrayio.cli.h5_to_mif module modelarrayio.cli.h5_to_nifti module modelarrayio.cli.main module modelarrayio.cli.mif_to_h5 module modelarrayio.cli.nifti_to_h5 module modelarrayio.cli.parser_utils module modelarrayio.cli.to_modelarray module modelarrayio.cli.utils module modelarrayio.storage module modelarrayio.storage.h5_storage module modelarrayio.storage.tiledb_storage module modelarrayio.storage.utils module

modelarrayio.utils module modelarrayio.utils.cifti module modelarrayio.utils.mif module modelarrayio.utils.mif_image module modelarrayio.utils.misc module modelarrayio.utils.nifti module modelarrayio.utils.s3_utils module module modelarrayio modelarrayio.cli modelarrayio.cli.cifti_to_h5 modelarrayio.cli.export_results modelarrayio.cli.h5_to_cifti modelarrayio.cli.h5_to_mif modelarrayio.cli.h5_to_nifti modelarrayio.cli.main modelarrayio.cli.mif_to_h5 modelarrayio.cli.nifti_to_h5 modelarrayio.cli.parser_utils modelarrayio.cli.to_modelarray modelarrayio.cli.utils modelarrayio.storage modelarrayio.storage.h5_storage modelarrayio.storage.tiledb_storage modelarrayio.storage.utils modelarrayio.utils modelarrayio.utils.cifti modelarrayio.utils.mif modelarrayio.utils.mif_image modelarrayio.utils.misc modelarrayio.utils.nifti modelarrayio.utils.s3_utils

N

nifti_to_h5() (in module modelarrayio.cli.nifti_to_h5)

normalize_column_names() (in module modelarrayio.storage.utils)

P

prefixed_output_path() (in module modelarrayio.cli.utils)

prepare_output_directory() (in module modelarrayio.cli.utils) prepare_output_parent() (in module modelarrayio.cli.utils)

R

read_result_names() (in module modelarrayio.cli.utils) resolve_compression() (in module modelarrayio.storage.h5_storage)

resolve_dtype() (in module modelarrayio.storage.h5_storage) (in module modelarrayio.storage.tiledb_storage) (in module modelarrayio.storage.utils)

S

sanitize_result_name() (in module modelarrayio.cli.utils)

T

to_modelarray() (in module modelarrayio.cli.to_modelarray)

to_modelarray_main() (in module modelarrayio.cli.to_modelarray)

W

write_column_names() (in module modelarrayio.storage.h5_storage) (in module modelarrayio.storage.tiledb_storage) write_hdf5_parcel_arrays() (in module modelarrayio.cli.utils) write_hdf5_scalar_matrices() (in module modelarrayio.cli.utils) write_mif() (in module modelarrayio.cli.h5_to_mif)

write_parcel_names() (in module modelarrayio.storage.tiledb_storage) write_rows_in_column_stripes() (in module modelarrayio.storage.h5_storage) (in module modelarrayio.storage.tiledb_storage) write_table_dataset() (in module modelarrayio.cli.utils) write_tiledb_parcel_arrays() (in module modelarrayio.cli.utils) write_tiledb_scalar_matrices() (in module modelarrayio.cli.utils)