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Walkthroughs
============

Step-by-step guides for converting neuroimaging data to and from the HDF5
format used by `ModelArray <https://pennlinc.github.io/ModelArray/>`_.


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    <div class="sphx-glr-thumbcontainer" tooltip="For imaging data in CIFTI format, use the modelarrayio to-modelarray command to convert the CIFTI files to the HDF5 format (``.h5``) used by ModelArray, and modelarrayio export-results to export results back to CIFTI. The CIFTI workflow is very similar to the MIF workflow (sphx_glr_auto_examples_plot_mif_workflow.py).">

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      <div class="sphx-glr-thumbnail-title">CIFTI (Greyordinate-wise) Data Conversion</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="For imaging data in NIfTI format, use the modelarrayio to-modelarray command to convert the NIfTI files to the HDF5 format (``.h5``) used by ModelArray, and modelarrayio export-results to export results back to NIfTI. The voxel workflow is very similar to the fixel workflow (sphx_glr_auto_examples_plot_mif_workflow.py).">

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  :doc:`/auto_examples/plot_voxel_workflow`

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      <div class="sphx-glr-thumbnail-title">NIfTI (Voxel-wise) Data Conversion</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="To convert fixel-wise data in MIF format to HDF5 format, use the modelarrayio to-modelarray command to convert the MIF files to the HDF5 format (``.h5``) used by ModelArray, and modelarrayio export-results to export results back to MIF. This guide assumes ModelArrayIO is already installed.">

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  :doc:`/auto_examples/plot_fixel_workflow`

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   /auto_examples/plot_cifti_workflow
   /auto_examples/plot_voxel_workflow
   /auto_examples/plot_fixel_workflow



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    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_